Publications

Jingxuan Zhao, Jianqiang Sun, Stella C. Shuai, Qi Zhao, Jianwei Shuai (2023). Predicting potential interactions between lncRNAs and proteins via combined graph auto-encoder methods. Briefings in Bioinformatics, 2023, 24(1), 1–9.

PDF Cite DOI

Jilu Wang, Aiai Shi, Jie Lyu (2023). A comprehensive atlas of epigenetic regulators reveals tissue-specific epigenetic regulation patterns. Epigenetics. 2023 Dec;18(1):2139067

PDF Cite DOI

Haoman Chen, Hui Ye, Fanxuan Chen, Yi Shi, Jiahe Li, Yuhang Li, Chaoyi Wei, Chengxi Zhang, Jinhao Jin, Quanyue Zhang, Shuo Pan, Dong Chen, Shichao Quan, Xiaowei Xu, Zongxing Yang, Lijun Xu, Yungui Zhang, Yi Wang, Yunlong Zhou, Ou Liu, Xiaoming Jiang, Liyu Liu, Qingzu He, Xiaoqu Hu, Jingye Pan, Jianwei Shuai, Feifei Su (2023). Revolutionizing Infection Risk Scoring: An Ensemble “From Weak to Strong” Deduction Strategy and Enhanced Point-of-Care Testing Tools. Adv. Intell. Syst. 2023, 2300224.

PDF Cite DOI

郭欢, 何情祖, 黎玉林, 帅建伟 (2023). 深度神经网络筛选蛋白质组学高置信度定量 肽段. 生物物理学, 2023, 11(2), 17-29.

PDF Cite DOI

陈玲玲, 程 烽, 胡 桓, 徐 飞, 李 翔, 林 海 (2023). 单细胞数据库建设的研究进展. 生物物理学, 2023, 11(2), 30-43.

PDF Cite DOI

Yunlong Ma, Chunyu Deng, Yijun Zhou, Yaru Zhang, Fei Qiu, Dingping Jiang, Gongwei Zheng, Jingjing Li, Jianwei Shuai, Yan Zhang, Jian Yang, Jianzhong Su (2023). Polygenic regression uncovers trait-relevant cellular contexts through pathway activation transformation of single-cell RNA sequencing data. Cell Genomics,Volume 3, Issue 9,2023,100383,.

PDF Cite DOI

Chenggui Yao, Jianqiang Sun, Jun Jin, Jianwei Shuai, Xiang Li, Yuangen Yao, Xufan Xu (2023). The power law statistics of the spiking timing in a neuronal network. Chaos, Solitons & Fractals,Volume 172,2023,113598,.

PDF Cite DOI

Chenggui Yao, Fei Xu, Xiangdong Tang, Wei Zou, Dongping Yang, Jianwei Shuai (2023). A physical understanding and quantification for the regulation of orexin on sleep. Chaos. 2023 Jul 1;33(7):073119..

PDF Cite DOI

Huan Hu, Zhen Feng, Xinghao Steven Shuai, Jie Lyu, Xiang Li, Hai Lin, Jianwei Shuai (2023). Identifying SARS-CoV-2 infected cells with scVDN. Front. Microbiol., 10 July 2023.

PDF Cite DOI

Jianwei Shuai (2023). Editorial: The pathogenesis and intervention of sleep disorders. Front. Neurosci., 27 April 2023 Sec. Sleep and Circadian Rhythms.

PDF Cite DOI

Hong Qi, Guoping Xu, Xiao-Long Peng, Xiang Li, Jianwei Shuai, Rui Xu (2020). Roles of four feedback loops in mitochondrial permeability transition pore opening induced by Ca^{2+} and reactive oxygen species . PHYSICAL REVIEW E 102, 062422 (2020).

PDF Cite DOI

Fei Xu, Dingyang Miao, Wei Li, Jun Jin, Zhilong Liu, Chuansheng Shen, Jiqian Zhang, Jianwei Shuai, Xiang Li (2023). Specificity and competition of mRNAs dominate droplet pattern in protein phase separation. Phys. Rev. Research 5, 023159.

PDF Cite DOI

Junyang Chen, Ziyi Chen, Mengzhu Wang, Ge Fan, Guo Zhong, Ou Liu, Wenfeng Du, Zhenghua Xu, Zhiguo Gong (2023). A Neural Inference of User Social Interest for Item Recommendation. Data Sci. Eng. (2023).

PDF Cite DOI

Shiyu Liu, Ou Liu, Junyang Chen (2023). A Review on Business Analytics: Definitions, Techniques, Applications and Challenges. Mathematics 2023.

PDF Cite DOI

Shiyu Liu, Ou Liu, Junyang Chen (2023). An Efficient Algorithm for the Joint Replenishment Problem with Quantity Discounts, Minimum Order Quantity and Transport Capacity Constraints. Mathematics 2023.

PDF Cite DOI

Tianzhu Hu, Yong Zhang, Jiaqi Yan, Ou Liu, Huaiqing Wang, Xiangqun Cui (2023). Intelligent monitoring and diagnosis of telescope image quality . Monthly Notices of the Royal Astronomical Society, Volume 525, Issue 3.

PDF Cite DOI

Junyang Chen, Ziyi Chen, Mengzhu Wang, Ge Fan, Guo Zhong, Ou Liu, Wenfeng Du, Zhenghua Xu, Zhiguo Gong (2023). A Neural Inference of User Social Interest for Item Recommendation. Data Sci. Eng. (2023).

PDF Cite DOI

Huan Hu, Zhen Feng, Hai Lin, Jinyan Cheng, Jie Lyu, Yaru Zhang, Fei Xu, Tao Lin, Qi Zhao, Jianwei Shuai (2023). Gene function and cell surface protein association analysis based on single-cell multiomics data. Computers in Biology and Medicine.

PDF Cite Code DOI

Jingxuan Zhao, Jianqiang Sun, Stella C. Shuai, Qi Zhao, Jianwei Shuai (2023). Predicting potential interactions between lncRNAs and proteins via combined graph auto-encoder methods. Briefings in Bioinformatics, 2023, 24(1), 1–9.

PDF Cite DOI

Huan Hu, Zhen Feng, Hai Lin, Junjie Zhao, Yaru Zhang, Fei Xu, Lingling Chen, Feng Chen, Yunlong Ma, Jianzhong Su, Qi Zhao, Jianwei Shuai (2023). Modeling and analyzing single-cell multimodal data with deep parametric inference. Briefings in Bioinformatics, 2023, 24(1), 1–13.

PDF Cite Code DOI

Jiacheng Wang, Fei Chen, Yuxi Ma, Liansheng Wang, Zhaodong Fei, Jianwei Shuai, Xiangdong Tang, Qichao Zhou, Jing Qin (2023). XBound-Former: Toward Cross-scale Boundary Modeling in Transformers. IEEE Transactions on Medical Imaging.

PDF Cite Code DOI

Chaoyi Wei, Xinli Xiang, Xiaobo Zhou, Siyan Ren, Qingyu Zhou, Wenjun Dong, Haizhen Lin, Saijun Wang, Yuyue Zhang, Hai Lin, Qingzu He, Yuer Lu, Xiaoming Jiang, Jianwei Shuai, Xiance Jin, Congying Xie (2023). Development and validation of an interpretable radiomic nomogram for severe radiation proctitis prediction in postoperative cervical cancer patients. Frontiers in Microbiology.

PDF Cite DOI

Jing Qu, Chunlei Shao, Yongfa Ying, Yuning Wu, Wen Liu, Yuhua Tian, Zhiyong Yin, Xiang Li, Zhengquan Yu, Jianwei Shuai (2022). The spring-like effect of microRNA-31 in balancing inflammatory and regenerative responses in colitis. iScience.2022 Feb 26;25(3):103982..

PDF Cite DOI

Dongdong Liu, Bowen Liu, Tao Lin, Guangya Liu, Guoyu Yang, Dezhen Qi, Ye Qiu, Yuer Lu, Qinmei Yuan, Stella C. Shuai, Xiang Li, Ou Liu, Xiangdong Tang, Jianwei Shuai, Yuping Cao, Hai Lin (2022). Measuring depression severity based on facial expression and body movement using deep convolutional neural network. Frontiers in Psychiatry.

PDF Cite DOI

Xiang Li, Peipei Zhang, Zhiyong Yin, Fei Xu, Zhang-Hua Yang, Jun Jin, Jing Qu, Zhilong Liu, Hong Qi, Chenggui Yao, Jianwei Shuai (2022). Caspase-1 and Gasdermin D Afford the Optimal Targets with Distinct Switching Strategies in NLRP1b Inflammasome-Induced Cell Death. Research (Wash D C). 2022 Jul 19;2022:9838341..

PDF Cite DOI

Chenggui Yao, Fei Xu, Jianwei Shuai, Xiang Li (2022). Temperature-optimized propagation of synchronous firing rate in a feed-forward multilayer neuronal network. Physica A : Statistical Mechanics and its Applications,596,2022.

PDF Cite DOI

卢雨儿, 胡 桓, 陈玲玲, 程 烽, 帅建伟, 林 海 (2022). 基于自然语言处理的单细胞转录组数据伪时间分析. 生物物理学, 2022, 10(2), 31-38.

PDF Cite DOI

Ruiqi Liu, Huan Hu, Melissa McNeil, Jiuzhi Xu, Xueyun Bi, Pengbo Lou, Christian F, Guerrero-Juarez, Xing Dai, Maksim V. Plikus, Xiang Li, Ou Liu, Xiangdong Tang, Jianwei Shuai, Zhengquan Yu, Cong Lv (2022). Dormant Nfatc1 reporter-marked basal stem progenitor cells contribute to mammary lobuloalveoli formation. iScience.2022 Feb 26;25(3):103982..

PDF Cite DOI

Yiming Li, Qingzu He, Huan Guo, Chuan-Qi Zhong, Xiang Li, Yulin Li, Jianwei Shuai (2022). MSSort-DIA XMBD: A deep learning classification tool of the peptide precursors quantified by OpenSWATH. J Proteomics. 2022..

PDF Cite DOI

Ligang Zhu, Xiang Li, Fei Xu, Zhiyong Yin, Jun Jin, Zhilong Liu, Hong Qi, Jianwei Shuai (2022). Network modeling-based identification of the switching targets between pyroptosis and secondary pyroptosis. Chaos, Solitons and Fractals.

PDF Cite DOI

刘博雯, 帅建伟, 曹玉萍 (2021). 面部表情识别技术在精神疾病诊疗中的应用. 中华行为医学与脑科学杂志 2021 年 10 月第 30 卷第 10 期.

PDF Cite DOI

Fei Xu, Zhiyong Yin, Ligang Zhu, Jun Jin, Qingzhu He, Xiang Li, Jian-Wei Shuai (2021). Oscillations Governed by the Incoherent Dynamics in Necroptotic Signaling. Frontiers in Physics volume 9 Article 726638.

PDF Cite DOI

Yanping Liu, Yang Jiao, Qihui Fan, Yuning Wu, Yu Zheng, Guoqiang Li, Jingru Yao, Gao Wang, Silong Lou, Guo Chen, Jianwei Shuai, Liyu Liu (2021). Shannon entropy for time-varying persistence of cell migration. Biophysical Journal 120, 2552–2565, June 15, 2021.

PDF Cite DOI

Xiangyu Qian, Ye Qiu, Qingzu He, Yuer Lu, Hai Lin, Fei Xu, Fangfang Zhu, Zhilong Liu, Xiang Li, Yuping Cao, Jianwei Shuai (2021). A Review of Methods for Sleep Arousal Detection Using Polysomnographic Signals. Communications Biology volume 4, Article number 1190 (2021).

PDF Cite DOI

Yanping Liu, Yang Jiao, Qihui Fan, Yu Zheng, Guoqiang Li, Gao Wang, Jingru Yao, Guo Chen, Silong Lou, Jianwei Shuai, Liyu Liu (2021). Deriving time-varying cellular motility parameters via wavelet analysis. Phys. Biol. 18 (2021) 046007.

PDF Cite DOI

Jingru Yao, Guoqiang Li, Yang Jiao, Yu Zheng, Yanping Liu, Gao Wang, Lianjie Zhou, Hongfei Zhang, Xianquan Zhang, Jianwei Shuai, Qihui Fan, Fangfu Ye, Silong Lou, Guo Chen, Kena Song, Yong Liao, Liyu Liu (2021). Biological gel-based microchamber array for tumor cell proliferation and migration studies in well-controlled biochemical gradients. Journal of Alloys and Compounds 862 (2021) 158035.

PDF Cite DOI

黎明, 帅建伟, 刘向阳 (2020). 软凝聚态物理学绪论 . 《中国学科发展战略·软凝聚态物理学》(上)，国家自然科学基金委员会，中国科学院编。科学出版社，2020，ISBN：9787030591548.

Cite

(2020). 癌细胞信号处理的生物物理建模 . 《中国学科发展战略·软凝聚态物理学》(上)，国家自然科学基金委员会，中国科学院编。科学出版社，2020，ISBN：9787030591548.

Cite