帅建伟

课题组组长
PI

国科温研究院

帅建伟

国家杰出青年基金获得者
福建省高校领军人才
厦门市双百计划人才
福建省闽江学者特聘教授
国际ICAM 学会奖金获得者
前厦门大学健康医疗大数据国家研究院副院长
2007-2022 厦门大学 物理系
厦门大学理论物理与天体物理研究所所长
2023-至今 中国科学院大学温州研究院
国科大温研院生物医学物理中心主任
长期从事生物医学建模、多组学大数据分析、人工智能深度学习等研究，在细胞信号网络、单细胞多组学分析、蛋白质质谱分析、健康医疗大数据、癌细胞动力学建模等方面取得了一系列有重要学术价值的研究成果。
在PRL, Nat Cell Biol, Nat Commun,PNAS, Protein Cell 等刊物上共发表论文220多篇。
2007年回国后主持20项基金，包括国家杰出青年基金、1项科技部脑科学重大子项目、1项国家重大子项目，5项国家基金委基金，1项美国NIH基金子项目。申请发明专利20多项。

Interests

智子力学
智能融合生命体
细胞信号网络动力学
深度学习核心算法构建
健康医疗大数据深度学习分析

Education

学士, 1989

厦门大学物理系
硕士, 1992

厦门大学物理系
博士, 1995

厦门大学物理系
研究助理员, 1996 - 1997

香港城市大学
博士后, 1997 - 1998

日本电气通信大学
博士后, 1998 - 2000

美国 CaseWesternReserve大学
博士后, 2001 - 2003

俄亥俄大学物理和天文学系
访问科学家, 2006.3- 2006.5

德国柏林Hahn-Meitner 研究院
助理项目科学家, 2004.1—2007.6

加州大学 Irvine分校神经生物和行为学系
访问科学家, 2013.9—2014.8

加州大学 Irvine分校物理系

前厦大课题组网页

科研基金

1. 福建省厦门大学闽江特聘教授基金（主持）计算生物物理，2007.7－2010.6

2. 国家自然科学基金面上项目（主持）多尺度钙离子信号的随机动力学，项目编号：10775114 （2008.1 – 2010.12）

3. 教育部科学技术研究重点项目（主持）钙离子波在神经胶质细胞间传播的数值模拟，项目编号：108075 （2008.1 – 2010.12）

4. 留学回国人员科研启动基金（主持）细胞内钙离子信号模拟，帅建伟

5. 美国NIH 研究基金项目（子项目负责人）Multi-scale observation and modeling of IP3/Ca signaling，项目负责人: John E. Pearson (Los Alamos Nat Lab)，项目编号：2R0lGM065830-06A1 （2009.3-2012.12），子课题

6. 国家自然科学基金面上项目（主持）神经元电脉冲信号和胞内钙离子化学信号的相互作用，项目编号：30970970 （2010.1 – 2012.12）

7. 教育部高等学校博士点科研基金（主持）细胞膜纳米管钙离子扩散模型研究，项目编号：20090121110028 （2010.1 – 2012.12）

8. 2011年国家杰出青年基金（主持）计算生物物理，项目编号：11125419 ，2012.1 – 2015.12）

9. 2011年福建省高校领军人才资助计划（主持）计算生物物理，（2013.1 – 2015.12）省委教育工委、省教育厅、省财政厅

10. 国家自然科学基金面上项目（主持）内质网与线粒体相互调控的钙信号系统模拟，项目编号：31370830 （2014.1–2017.12）

11. 国家自然科学基金面上项目（主持）受体相互作用蛋白RIP1调控细胞死亡方式的机制研究，项目编号：11675134 （2017.1–2020.12）

12. 美国ICAM Branches Cost Sharing Fund基金（主持）General Workshop Award，2016

13. 国家自然科学基金面上项目（主持）蛋白质组学质谱数据的深度学习分析技术，项目编号：11874310（2019.1–2022.12）

14. 厦门中翎易优创科技有限公司横向合作经费（主持）厦门大学物理科学与技术学院中翎易健康智能研发中心，2018.1-2020.12

15. 厦门中翎易优创科技有限公司横向合作经费（主持）静电治疗临床试验大数据深度学习分析，2019.6-2020.2

16. 厦门市科技计划项目（主持）睡眠静电治疗临床试验大数据深度学习分析，2018.08–2021.07

17. 国家自然科学基金重大项目（子课题负责人）细胞信号网络的动力学及其统计物理特性，项目编号：12090052, 2021.1-2025.12

18. 国家自然科学基金专项项目（主持）厦门大学理论物理交流交叉平台，项目编号：12047577,2021.1-2021.12

19. 福建省高校产学研重大项目（主持）医用穿戴式远程多维体征智能监测系统研发及其产业化，项目编号：2020Y4001， 2020.11-2023.11

20. 国科大温州研究院生物医学物理中心（主持）基因蛋白组学深度学习分析， 2021.1-2025.12

21. 科技部科技创新2030重大项目（子课题负责人）基于深度学习和动力学建模分析探索睡眠障碍发生发展动力学机制，项目编号：2021ZD201904，2021.12-2026.11

22. 国家自然科学基金专项项目（主持）厦门大学理论物理交叉学科发展与交流平台，项目编号：12147212,2022.1-2022.12
23. 温州市生物物理重点实验室 2021.9,
24. 国科大温州研究院（主持）生物医学物理中心， 2021.1-2025.12,
25. 浙江省瓯江实验室（主持）生物组学人工智能分析，2022.1-2026.12

学术任职

杂志编委 Journal of Biophysics （2011）

杂志编委 Computational Intelligence and Neuroscience（2011）

杂志编委 Insight Biophysics（2011-2013）

杂志编委 Open Journal of Biophysics（2011-2013）

国际复杂自适应物质学会（International Institute for Complex Adaptive Matter）
学术运营委员会委员 (2010 – 2014)

Biomedical Physics & Engineering Express  编委 (2015 – 至今)

厦门大学物理科学与技术学院中翎易健康智能研发中心主任  学术运营委员会委员 (2018 – 2021)

厦门大学理论物理与天体物理研究所  所长 (2018 – 2022)

厦门大学健康医疗大数据国家研究院  副院长 (2018 – 2022)

中文期刊《生物物理学》主编
   (2012 – 至今)

中国物理学会秋季会议软物质分会召集人(2013 – 至今)

全国分子系统生物学专业分会委员(2019 – 至今)

国科温州研究院生物医学物理中心主任(2020 – 至今)

DFG数字友好全球智库专家委员(2022 – 至今)

中国物理学会第十三次全国会员代表(2023 – 至今)

中国城市发展研究会第八届理事会特邀理事(2023 – 至今)

学术论文

2023

232. Haoman Chen, Hui Ye, Fanxuan Chen, Yi Shi, Jiahe Li, Yuhang Li, Chaoyi Wei, Chengxi Zhang, Jinhao Jin, Quanyue Zhang, Shuo Pan, Dong Chen, Shichao Quan, Xiaowei Xu, Zongxing Yang, Lijun Xu, Yungui Zhang, Yi Wang, Yunlong Zhou, Ou Liu, Xiaoming Jiang, Liyu Liu, Qingzu He, Xiaoqu Hu, Jingye Pan, Jianwei Shuai, Feifei Su. Revolutionizing Infection Risk Scoring: An Ensemble “From Weak to Strong” Deduction Strategy and Enhanced Point-of-Care Testing Tools. Advanced Intelligent Systems. 2023, 2300224 1-13, (2023).

230. Hongyan Gao, Jianqiang Sun, Yukun Wang, Yuer Lu, Liyu Liu, Qi Zhao*, and Jianwei Shuai*. Predicting metabolite–disease associations based on auto-encoder and non-negative matrix factorization. Briefings in Bioinformatics, 2023, 24: bbad259 1–13, (IF = 9.5) (2023).

229. Huan Hu, Zhen Feng, Xinghao Steven Shuai, Jie Lyu, Xiang Li*, Hai Lin* and Jianwei Shuai. Identifying SARS-CoV-2 infected cells with scVDN. Frontiers in Microbiology. 2023, 14: 1236653. (IF = 5.2) (2023).

228. Fei Xu, Dingyang Miao, Wei Li, Jun Jin, Zhilong Liu, Chuansheng Shen, Jiqian Zhang, Jianwei Shuai, and Xiang Li*. Specificity and competition of mRNAs dominate droplet pattern in protein phase separation. Physical Review Research 2023, 5: 023159. (IF=4.2) (2023).

227. Hong Qi*, Yu-Song Yin, Zhi-Yong Yin, Xiang Li, Jian-Wei Shuai. Mitochondrial outer membrane permeabilization and inner membrane permeabilization in regulating apoptosis and inflammation. Journal of Theoretical Biology 2023, 571: 111558. (IF=2.4) (2023).

226. Chenggui Yao, Fei Xu, Xiangdong Tang, Wei Zou*, Dongping Yang*, Jianwei Shuai. A physical understanding and quantification for the regulation of orexin on sleep. Chaos 2023, 33: 073119. (IF=2.9) (2023).

225. Qingzu He#, Chuan-Qi Zhong#, Xiang Li#, Huan Guo, Yiming Li, Mingxuan Gao, Rongshan Yu, Xianming Liu, Fangfei Zhang, Tiannan Guo, Donghui Guo, Fangfu Ye, Jianwei Shuai*, and Jiahuai Han*, Dear-DIAXMBD: deep autoencoder for data-independent acquisition proteomics. Research 2023, 6: 0179. (IF=10.5) (2023).

224. Chenggui Yao, JianQiang Sun, Jun Jin, Jianwei Shuai, Xiang Li, Yuangen Yao∗, Xufan Xu， The power law statistics of the spiking timing in a neuronal network, Chaos, Solitons and Fractals, 2023, 172: 113598. (IF=9.92) (2023).

223.郭欢, 何情祖, 黎玉林, 帅建伟. 深度神经网络筛选蛋白质组学高置信度定量肽段. 生物物理学, 2023, 11(2): 17-29.(2023).

222.Jianwei Shuai. Editorial: The pathogenesis and intervention of sleep disorders. Frontiers in Neuroscience, 2023, 17: 1176932. (2023).

221.Jiacheng Wang, Fei Chen, Yuxi Ma, Liansheng Wang, Zhaodong Fei, Jianwei Shuai, Xiangdong Tang, Qichao Zhou, Jing Qin. XBound-Former: Toward Cross-scale Boundary Modeling in Transformers. IEEE Transactions on Medical Imaging 2023, 42(6): 1735-1745. (IF = 11.037) (2023).

220.袁钦湄，杨峘，张骏，刘博雯，帅建伟，曹玉萍. 基于深度学习算法的抑郁症表情与动作及其心理整合变化的过程分析. 中国临床心理学杂志. 2023, 31(1): 241.(2023).

219.Huan Hu, Zhen Feng, Hai Lin, Jinyan Cheng, Jie Lyu, Yaru Zhang, Junjie Zhao, Fei Xu, Tao Lin, Qi Zhao*, Jianwei Shuai*. Gene function and cell surface protein association analysis based on single-cell multiomics data. Computers in Biology and Medicine. 2023, 157, 106733, (IF=6.698) (2023).

218.Huan Hu, Zhen Feng, Hai Lin, Junjie Zhao, Yaru Zhang, Fei Xu, Lingling Chen, Feng Chen, Yunlong Ma, Jianzhong Su, Qi Zhao*, Jianwei Shuai*. Modeling and analyzing single-cell multimodal data with deep parametric inference. Briefings in Bioinformatics, 2023, 24(1): bbad005. (IF= 13.99) (2023).

217.Jingxuan Zhao, Jianqiang Sun, Stella C Shuai, Qi Zhao1*, Jianwei Shuai*, Predicting potential interactions between lncRNAs and proteins via combined graph auto-encoder methods, Briefings in Bioinformatics 2023, 24(1), bbac527, 1-9, (IF= 13.99) (2023).

216.Chaoyi Wei, Xinli Xiang, Xiaobo Zhou, Siyan Ren, Qingyu Zhou, Wenjun Dong, Haizhen Lin, Saijun Wang, Yuyue Zhang, Hai Lin, Qingzu He, Yuer Lu, Xiaoming Jiang, Jianwei Shuai, Xiance Jin, Congying Xie. Development and validation of an interpretable radiomic nomogram for severe radiation proctitis prediction in postoperative cervical cancer patients. Frontiers in Microbiology. 2023, 13: 1090770. (IF = 6.06) (2023).
2022

215.Dongdong Liu†, Bowen Liu†, Tao Lin†, Guangya Liu, Guoyu Yang, Dezhen Qi, Ye Qiu, Yuer Lu, Qinmei Yuan, Stella C. Shuai, Xiang Li, Ou Liu, Xiangdong Tang, Jianwei Shuai, Yuping Cao* and Hai Lin*. Measuring depression severity based on facial expression and body movement using deep convolutional neural network. Frontiers in Psychiatry, 2022, 13: 1017064, (IF = 5.435) DOI: 10.34133/2022/9838341 (2022).

214. Jing Qu†, Chunlei Shao†, Yongfa Ying, Yuning Wu, Wen Liu, Yuhua Tian, Zhiyong Yin, Xiang Li*, Zhengquan Yu* and Jianwei Shuai. The spring-like effect of microRNA-31 in balancing inflammatory and regenerative responses in colitis, Frontiers in Microbiology 2022, 13: 1089729. (IF = 6.06)(2022).

213.Jun Xie, Jiacheng Han, Dezhen Qi, Feng Chen, Kaer Huang, and Jianwei Shuai. "Lane detection with position embedding", Proc. SPIE 12342, Fourteenth International Conference on Digital Image Processing (ICDIP 2022), 123420B (12 October 2022); (2022).

212. Wenya Wang, Li Zhang, Jianqiang Sun, Qi Zhao*, Jianwei Shuai*, Predicting the potential human lncRNA–miRNA interactions based on graph convolution network with conditional random field, Briefings in Bioinformatics 2022, 23: bbac463, 1-9, IF= 13.99 (2022).

211. Jinjin Zhong, Zhengyong Song, Long Zhang, Xiang Li, Qingzu He, Yuer Lu, Sarah Kariko, Liyu Liu, Fangfu Ye*, Ling Li*, and Jianwei Shuai*. Assembly of guanine crystals as a low-polarizing broadband multilayer reflector in spiders, Phoroncidia rubroargentea. ACS Applied Materials & Interfaces, 2022, 14: 32982-32993. (2022).

210.Xiang Li#, Peipei Zhang#, Zhiyong Yin#, Fei Xu, Zhang-Hua Yang, Jun Jin, Jing Qu, Zhilong Liu, Ligang Zhu, Hong Qi, Chenggui Yao, Jianwei Shuai*. Caspase-1 and Gasdermin D afford the optimal targets with distinct switching strategies in NLRP1b inflammasome-induced cell death. Research, 2022, 2022: 9838341. (IF= 10.5). (2022)

209.Ruiqi Liu, Huan Hu, Melissa McNeil, Jiuzhi Xu, Xueyun Bi, Pengbo Lou, Christian F. Guerrero-Juarez, Xing Dai, Maksim V. Plikus, Jianwei Shuai*, Zhengquan Yu*, and Cong Lv*. Dormant Nfatc1 reporter-marked basal stem/progenitor cells contribute to mammary lobuloalveoli formation. iScience, 2022, 25(3), 103982 1-22, DOI:https://doi.org/10.1016/j.isci.2022.103982. (IF= 6.11)(2022).

208. 卢雨儿，胡桓，陈玲玲，程烽，帅建伟，林海。基于自然语言处理的单细胞转录组数据伪时间分析， 生物物理学，2022, 10(2), 31-38。(2022).

207. Ligang Zhu, Xiang Li, Fei Xua, Zhiyong Yin, Jun Jin, Zhilong Liu , Hong Qi, Jianwei Shuai*. Network modeling-based identification of the switching targets between pyroptosis and secondary pyroptosis. Chaos, Solitons and Fractals 155 (2022) 111724. (IF= 9.92) (2022).

206. Yiming Li , Qingzu He, Huan Guo, Chuan-Qi Zhong , Xiang Li, Yulin Li, Jiahuai Han* , Jianwei Shuai *. MSSort-DIAXMBD: A deep learning classification tool of the peptide precursors quantified by OpenSWATH. Journal of Proteomics 259 (2022) 104542 (IF= 3.86)(2022).

205. Xin Chen , Rongfeng Zhu, Jinjin Zhong , Yongfa Ying , Wenxin Wang , Yating Cao , Hanyi Cai , Xiang Li , Jianwei Shuai and Jiahuai Han *.Mosaic composition of RIP1–RIP3 signalling hub and its role in regulating cell death. Nature Cell Biology (2022).(pdf)

204. Ligang Zhu, Xiang Li, Fei Xua, Zhiyong Yin, Jun Jin, Zhilong Liu , Hong Qi, Jianwei Shuai*. Network modeling-based identification of the switching targets between pyroptosis and secondary pyroptosis. Chaos, Solitons and Fractals 155 (2022) 111724(pdf)

203. Yiming Li , Qingzu He, Huan Guo, Chuan-Qi Zhong , Xiang Li, Yulin Li, Jiahuai Han* , Jianwei Shuai *. MSSort-DIAXMBD: A deep learning classification tool of the peptide precursors quantified by OpenSWATH. Journal of Proteomics 259 (2022) 104542(pdf)

202. Chenggui Yao, Fei Xu , Jianwei Shuai , Xiang Li,∗. Temperature-optimized propagation of synchronous firing rate in a feed-forward multilayer neuronal network. Physica A 596 (2022) 127139(pdf)

201. Huan Hu, Ruiqi Liu, Chunlin Zhao, Yuer Lu, Yichun Xiong, Lingling Chen, Jun Jin, Yunlong Ma, Jianzhong Su, Zhengquan Yu, Feng Cheng, Fangfu Ye, Liyu Liu, Qi Zhao & Jianwei Shuai. CITEMOXMBD: A flexible single-cell multimodal omics analysis framework to reveal the heterogeneity of immune cells. RNA BIOLOGY 2022, 19: 290–304(pdf)

2021

200. Yuning Wu, Qin Wang, Jing Qu, Wen Liu, Xuejuan Gao, Xiang Li, Xinhao Ouyang, Chentao Lin, Jianwei Shuai*. Different response modes and cooperation modulations of blue‐light‐receptors in photomorphogenesis[J]. Plant, Cell & Environment, 2021, 44: 1802-1815.(pdf)

199. Ye Qiu, Dongdong Liu, Guoyu Yang, Dezhen Qi, Yuer Lu, Qingzu He, Xiangyu Qian, Xiang Li, Yuping Cao*, Jianwei Shuai*. Cuffless blood pressure estimation based on composite neural network and graphics informationl. Biomedical Signal Processing and Control, 2021, 70: 103001 1-10(pdf)

198. 何情祖,钟传奇,李翔, 帅建伟* ,韩家淮* . 数据不依赖获取的质谱数据的深度学习分析方法[ J ] . 厦门大学学报(自然科学版), 2021, 60 ( 1 ): 97-103(pdf)

197. Xiangyu Qian, Ye Qiu, Qingzu He, Yuer Lu, Hai Lin, Fei Xu, Fangfang Zhu, Zhilong Liu, Xiang Li, Yuping Cao*, and Jianwei Shuai*. A Review of Methods for Sleep Arousal Detection Using Polysomnographic Signals. Brain Sciences 2021, 11(10): 1274.(pdf)

196. Zhiyong Yin, Pei-pei Zhang, Fei Xu, Zhilong Liu, Ligang Zhu, Jun Jin, Hong Qi, Jianwei Shuai, and Xiang Li, Cell death modes are specified by the crosstalk dynamics within pyroptotic and apoptotic signaling, Chaos 31, 093103 (2021)(pdf)

195. Jingru Yao,# Guoqiang Li,# Yang Jiao, Yu Zheng, Yanping Liu, Gao Wang, Lianjie Zhou, Hongfei Zhang, Xianquan Zhang, Jianwei Shuai, Qihui Fan, Fangfu Ye, Silong Lou, Guo Chen, Kena Song,* Yong Liao,* and Liyu Liu*. Biological gel-based microchamber array for tumor cell proliferation and migration studies in well-controlled biochemical gradients. Lab on a Chip, 2021, https://doi.org/10.1039/D0LC00951B(pdf)

194 Yanping Liu, Yang Jiao, Qihui Fan, Yu Zheng, Guoqiang Li, Jingru Yao, Gao Wang, Silong Lou, Guo Chen, Jianwei Shuai,* and Liyu Liu,*. Shannon Entropy for Time-Varying Persistence of Cell Migration[J]. Biophysical Journal, 2021.(pdf)

193. Zhiliang Lyu† , Zhijin Wang† , Fangfang Luo , Jianwei Shuai* and Yandong Huang*. Protein Secondary Structure Prediction With a Reductive Deep Learning Method. Frontiers in Bioengineering and Biotechnology, 2021, 9:687426.(pdf)

192. Yanping Liu, Yang Jiao, Da He, Qihui Fan , Yu Zheng, Guoqiang Li, Gao Wang, Jingru Yao, Guo Chen, SilongLou , Jianwei Shuai*, and Liyu Liu*. Deriving time-varying cellular motility parameters via wavelet analysis[J]. Physical Biology, 2021, 18(4):046007 (16pp).(pdf)

191. 林友辉, 张志森, 郭文熹, 吴建洋,曹学正,陈虎,帅建伟,吴晨旭*. 典型软物质体系的结构,性质及其应用[J]. 厦门大学学报:自然科学版, 60(3):14.(pdf)

190. Si Wang, Ziao Shen, Zhenyu Shen, Yuanjun Dong , Yanran Li, Yuxin Cao, Yanmei Zhang, Shengshi Guo, Jianwei Shuai, Yun Yang, Changjian Lin, Xun Chen*, Xingcai Zhang*, Qiaoling Huang*. Machine-learning micropattern manufacturing[J]. Nano Today, 2021, 38:101152.(pdf)

189. Wen Liu, Xiang Li, Hong Qi, Yuning Wu, Jing Qu, Zhiyong Yin, Xuejuan Gao, Aidong Han*, Jianwei Shuai*. Biphasic regulation of transcriptional surge generated by the gene feedback loop in a two-component system[J]. Bioinformatics, 2021, 1-9.(pdf)

188. Bharathi, Mohanbabu; Balraj, Babu; Sivakumar, Chandrasekar; Wang, Zhiwei; Shuai, Jianwei; Ho, Mon-Shu; Guo, Donghui, Effect of Ag doping on bipolar switching operation in molybdenum trioxide (MoO3) nanostructures for non-volatile memory, Journal of Alloys and Compounds, 2021, 862: 158035.(pdf)

187. 李翔, 祁宏, 黄艳东, 帅建伟*，钙离子信号及细胞调控信号网络动力学，中国科学: 物理学力学天文学，51， 030010 （2021）(pdf)

186. Mingxuan Gao, Wenxian Yang, Chenxin Li, Yuqing Chang, Yachen Liu, Qingzu He, Chuan-Qi Zhong, Jianwei Shuai, Rongshan Yu* & Jiahuai Han*. Deep representation features from DreamDIAXMBD improve the analysis of data-independent acquisition proteomics. Communications Biology 4, 1190 (2021)(pdf)

185. Xiang Li#, Chuan-Qi Zhong#, Rui Wu#, Xiaozheng Xu, Zhang-Hua Yang, Shaowei Cai, Xiurong Wu, Xin Chen, Zhiyong Yin, Qingzu He, Dianjie Li, Fei Xu, Yihua Yan, Hong Qi, Changchuan Xie, Jianwei Shuai*, Jiahuai Han*. RIP1-dependent linear and nonlinear recruitments of caspase-8 and RIP3 respectively to necrosome specify distinct cell death outcomes. Protein & Cell, 2021, 12(11): 858-876 doi: 10.1007/s13238-020-00810-x.(pdf)

184. Ling Li, Carl Goodrich, Haizhao Yang, Katherine R. Phillips, Zian Jia, Hongshun Chen, Lifeng Wang, Jinjin Zhong, Anhua Liu, Jianfeng Lu, Jianwei Shuai, Michael P. Brenner, Frans Spaepen, and Joanna Aizenberg. Microscopic origins of the crystallographically preferred growth in evaporation-induced colloidal crystals. PNAS, 2021 Vol. 118(32): e2107588118(pdf)

183. L. H. Zhang, M. J. Cheng, X. H. Shi, J. W. Shuai, and Z. Z. Zhu, Bain and Nishiyama–Wassermann transition path separation in the martensitic transitions of Fe, RSC Advances, 2021,11, 3043-3048(pdf)

182. 邓亚彬; 王志伟; 赵晨晖; 李琳; 贺珊; 李秋红; 帅建伟; 郭东辉*.类脑神经网络与神经形态器件及其电路综述, 计算机应用研究, 2021, 38(08): 2241-2250.(pdf)

181. 刘博雯; 帅建伟; 曹玉萍. 面部表情识别技术在精神疾病诊疗中的应用, 中华行为医学与脑科学杂志, 2021, 30(10): 955-960.(pdf)

180. Xu, Fei; Yin, Zhiyong; Zhu, Ligang; Jin, Jun; He, Qingzhu; Li, Xiang*; Shuai, Jianwei. Oscillations Governed by the Incoherent Dynamics in Necroptotic Signaling. Frontiers in Physics, 2021, 9: 726638.(pdf)

179. Zhang, Lihong; Wu, Shunqing; Shuai, Jianwei; Hou, Zhufeng*; Zhu, Zizhong*. Formation of oxygen vacancies in Li(2)FeSiO(4): first-principles calculations. Physical Chemistry Chemical Physics, 2021, 23(36): 20444-20452.(pdf)

178. Li, Xiang; Jin, Jun; Zhang, Xiaocui; Xu, Fei; Zhong, Jinjin; Yin, Zhiyong; Qi, Hong; Wang, Zhaoshou*; Shuai, Jianwei*. Quantifying the optimal strategy of population control of quorum sensing network in Escherichia coli. NPJ Syst Biol Appl, 2021, 7(1): 35.(pdf)

177. Qi, Hong*; Shi, Zhi-Qiang; Li, Zhi-Chao; Sun, Chang-Jun; Wang, Shi-Miao; Li, Xiang; Shuai, Jian-Wei*. Dual mechanisms of Bcl-2 regulation in IP3-receptor-mediated Ca2+ release: A computational study. Chinese Physics B, 2021, 30(10): 108704(pdf)

2020

176. He, Zhiwei; Yao, Chenggui; Shuai, Jianwei; Nakano, Tadashi, Enhanced vibrational resonance in a single neuron with chemical autapse for signal detection*, Chinese Physics B, 2020, 29(12): 128702. DOI: 10.1088/1674-1056/abb7f9(pdf)

175. Song, Yongli; Guerrero-Juarez, Christian F.; Chen, Zhongjian; Tang, Yichen; Ma, Xianghui; Lv, Cong; Bi, Xueyun; Deng, Min; Bu, Lina; Tian, Yuhua; Liu, Ruiqi; Zhao, Ran; Xu, Jiuzhi; Sheng, Xiaole; Du, Sujuan; Liu, Yeqiang; Zhu, Yunlu; Shan, Shi-Jun; Chen, Hong-Duo; Zhao, Yiqiang; Zhou, Guangbiao; Shuai, Jianwei; Ren, Fazheng; Xue, Lixiang; Ying, Zhaoxia; Dai, Xing; Lengner, Christopher J.; Andersen, Bogi; Plikus, Maksim, V; Nie, Qing; Yu, Zhengquan, The Msi1-mTOR pathway drives the pathogenesis of mammary and extramammary Paget's disease, Cell Research, 2020, 30(10): 854-872. DOI: 10.1038/s41422-020-0334-5(pdf)

174. 黎明，帅建伟，刘向阳，欧阳钟灿，软凝聚态物理学绪论，《中国学科发展战略·软凝聚态物理学》(上)，国家自然科学基金委员会，中国科学院编。科学出版社，2020，ISBN：9787030591548。

173. 帅建伟，刘锋，癌细胞信号处理的生物物理建模，《中国学科发展战略·软凝聚态物理学》(下)，国家自然科学基金委员会，中国科学院编。科学出版社，2020，ISBN：9787030621474。

172. Hong Qi*, Guoping Xu, Xiao-Long Peng, Xiang Li, Jianwei Shuai, and Rui Xu*. Roles of four feedback loops in mitochondrial permeability transition pore (PTP) opening induced by Ca2+ and reactive oxygen species (ROS). Physics Review E, 2020, 102: 062422 1-10(pdf)

171. T Gutiérrez, Hong Qi, MC Yap, N Tahbaz, LA Milburn, E Lucchinetti, PH Lou, M Zaugg, PG LaPointe, P Mercier, M Overduin, H Bischof, S Burgstaller, R Malli, K Ballanyi, Jianwei Shuai, T Simmen*; The ER Chaperone Calnexin Controls Mitochondrial Positioning and Respiration, Science Signaling, 2020, 13 (638): eaax6660-1-15.(pdf)

170. Xiang Li, Chuan-Qi Zhong, Zhiyong Yin, Hong Qi, Fei Xu, Qingzu He and Jianwei Shuai*. Data-Driven Modeling Identifies TIRAP-Independent MyD88 Activation Complex and Myddosome Assembly Strategy in LPS/TLR4 Signaling. International Journal of Molecular Sciences, 2020, 21(9) 3061 1-15.(pdf)

169. Hong Qi,* Xiang Li, Zhen Jin, Thomas Simmen, and Jianwei Shuai*. The Oscillation Amplitude, Not the Frequency of Cytosolic Calcium Regulates Apoptosis Induction. iScience, 2020, 23(11): 101671.(pdf)

168. Yandong Huang, Jing Qu, Xiang Li, Fang Wei, Jinjin Zhong, Yuning Wu, Meichun Cai, Xuejuan Gao, John E. Pearson, and Jianwei Shuai,* Anti-cross-correlation between the adjacent open and closed durations of Markovian channels. Physical Review E. 2020, 101, 012418(pdf)

167. Chuan-Qi Zhong,* Rui Wu, Xi Chen, Suqin Wu, Jianwei Shuai, and Jiahuai Han.* Systematic Assessment of the Effect of Internal Library in Targeted Analysis of SWATH-MS. Journal of Proteome Research 2020, 19, 477−492(pdf)

166. Yanping Liu, Xiang Li, Jing Qu, Xuejuan Gao, Qingzu He, Liyu Liu, Ruchuan Liu,* Jianwei Shuai*. Motile parameters of cell migration in anisotropic environment derived by speed power spectrum fitting with double exponential decay. Frontiers of Physics. 2020, 15: 13602 1-11(pdf)

165. Yi He, Ling Xiong, Xuejuan Gao, Miaomiao Hai, Yanping Liu, Gao Wang, Guo Chen, Jianwei Shuai, Yang Jiao, Xixiang Zhang, Ruchuan Liu*, Liyu Liu*. Morphological quantification of proliferation-to-invasion transition in tumor spheroids. BBA - General Subjects. 2020, 1864: 129460 1-6(pdf)

164. Xiang Li, Hong Qi, Xiao-Cui Zhang, Fei Xu, Zhi-Yong Yin, Shi-Yang Huang, Zhao-Shou Wang*, and Jian-Wei Shuai*. Quantitative modeling of bacterial quorum sensing dynamics in time and space. Chin. Phys. B 2020, 29: 108702 1-8(pdf)

163. 张少杰, 尤欢欢, 林海, 钱镶玉, 何情祖, 胡桓, 熊富海, 曹玉萍, 帅建伟. 睡眠呼吸暂停的人工智能分析. 生物物理学, 2020, 8(1): 1-17.(pdf)

162. 尤欢欢, 张少杰, 林海, 钱镶钰, 何情祖, 胡桓, 屈静, 熊富海, 帅建伟. 骨科康复医疗领域知识图谱建立及其分析. 人工智能与机器人研究, 2020, 9(3): 182-193.(pdf)

161.袁钦湄，王星，帅建伟，林海，曹玉萍. 基于人工智能技术的抑郁症研究进展. 中国临床心理学杂志，2020，28(1)：82-86。(pdf)

160. 袁钦湄，洪志令，王星，帅建伟，曹玉萍. 人工智能在精神疾病中的应用与展望. 国际精神病学杂志，2020，47(1)：4-7。(pdf)

2019

159. Mohanbabu Bharathi, Zhiwei Wang, Bingrui Guo, Babu Balraj, Qiuhong Li, Jianwei Shuai and Donghui Guo*, Memristors: Understanding, Utilization and Upgradation for Neuromorphic Computing, Nano (2020), 15(11): 2030004, https://doi.org/10.1142/S1793292020300054(pdf)

158.Ling Xiong, Yanping Liu, Ruchuan Liu, Wei Yuan, Gao Wang, Yi He, Jianwei Shuai, Yang Jiao, Xixiang Zhang, Weijing Han, Junle Qu, Liyu Liu. Quantitative heterogeneity and subgroup classification based on motility of breast cancer cells. Chinese Physics B. 2019, 28(10): 108701 . doi: 10.1088/1674-1056/ab3af4(pdf)

157. Xuejuan Gao†, Yanfeng Zhao†, Yi Bao†, Wei Yin, Liyu Liu, Ruchuan Liu, Zhengquan Yu, Xiao Zhou*, Jianwei Shuai*. Poor Prognosis with Coexistence of EGFR T790M Mutation and Common EGFR-activating Mutation in Non-Small Cell Lung Cancer. Cancer Management and Research. 2019, 11: 9621-9630 (pdf)

156. Chenggui Yao, Zhiwei He, Tadashi Nakano, Yu Qian, Jianwei Shuai*. Inhibitory-autapse-enhanced signal transmission in neural networks. Nonlinear Dynamics. 2019, 97: 1425-1437. https://doi.org/10.1007/s11071-019-05060-z (pdf)

155. Xuejuan Gao†, Junjie Zhu†, Linsong Chen†, Yan Jiang, Xiao Zhou, Jianwei Shuai*, Yanfeng Zhao*. Clinical And Imageological Features Of Lung Squamous Cell Carcinoma With EGFR Mutations. Cancer Management and Research. 2019, 11: 9017-9024. (pdf)

154. 徐富献，王抒伟，钱镶钰，胡桓，何情祖，林海，帅建伟. 睡眠自动分期方法综述. 生物物理学, 2019, 2018, 6(2), 7-30 (pdf)

153. Sten Rüdiger and Jianwei Shuai. Modeling of Stochastic Ca2+ Signals. Book: Computational Glioscience, Editors: Maurizio De Pittà, Hugues Berry. Publisher: Springer, Cham. Springer Nature Switzerland AG 2019, Print ISBN 978-3-030-00815-4, Online ISBN 978-3-030-00817-8, DOI https://doi.org/10.1007/978-3-030-00817-8. (pdf)

152. 王抒伟，徐富献，钱镶钰，胡桓，何情祖，林海，帅建伟. 应用深度神经网络对多导睡眠图的睡眠分期研究. 生物物理学, 2019, 7(2): 11-25. DOI: 10.12677/biphy.2019.72002(pdf)

151. Y Tian, J Xu, Y Li, R Zhao, S Du, C Lv, W Wu, R Liu, X Sheng, Y Song, X Bi, G Li, M Li, X Wu, P Lou, H You, W Cui1, J Sun, Jianwei Shuai, F Ren, B Zhang, M Guo, X Hou, K Wu, L Xue, H Zhang, MV Plikus, Y Cong, CJ Lengner, Z Liu, Zhengquan Yu. MicroRNA-31 Reduces Inflammatory Signaling and Promotes Regeneration in Colon Epithelium, and Delivery of Mimics in Microspheres Reduces Colitis in Mice. Gastroenterology, 2019, 1-16. https://doi.org/10.1053/j.gastro.2019.02.023 (pdf)

2018

150 Hang Xie, Yang Jiao, Qihui Fan, Miaomiao Hai, Jiaen Yang, Zhijian Hu, Yue Yang, Jianwei Shuai, Guo Chen, Ruchuan Liu*, Liyu Liu*. Modeling three-dimensional invasive solid tumor growth in heterogeneous microenvironment under chemotherapy. PLOS ONE, 2018, 13(10): e0206292. https://doi.org/10.1371/journal.pone.0206292(pdf)

149. 张晓翠，黄世阳，李翔，刘艳平，吴宇宁，帅建伟*，王兆守*. 细菌群体感应机制的动力学建模研究. 生物物理学, 2018, 6(2), 7-30 (pdf)

148. Chenggui Yao, Zhiwei He, Tadashi Nakano, and Jianwei Shuai. Spiking patterns of a neuron model to stimulus: Rich dynamics and oxygen’s role. Chaos 28, 083112 (2018) (pdf)

147. Xiang Li, Yuning Wu, Xuejuan Gao, Meichun Cai, and Jianwei Shuai. Wave failure at strong coupling in intracellular Ca2+ signaling system with clustered channels. Physical Review E 2018, 97: 012406 (pdf)

146. Hong Qi, Yu Jiang, Zhiyong Yin, Ke Jiang, Linxi Li and Jianwei Shuai. Optimal pathways for the assembly of the Apaf-1.cytochrome c complex into apoptosome. Physical Chemistry Chemical Physics 2018, 20: 1964 (pdf)

2017

145. Chenggui Yao, Meng Zhan, Jianwei Shuai, Jun Ma, and Jurgen Kurths. Insensitivity of synchronization to network structure in chaotic pendulum systems with time-delay coupling. Chaos 2017, 27: 126702(pdf)

144. Yanping Liu, Xiaocui Zhang，Yuling Wu，Wen Liu，Xiang Li, Ruchuan Liu, Liyu Liu, Jianwei Shuai. The derivation of persistent times for anisotropic migration of cells. Chinese Physics B 2017, 26: 128707 (pdf)

143. Xiang Li, Jingjing Zhong, Xuejuan Gao, Yuning Wu, Jianwei Shuai, and Hong Qi. The biexponential distribution of open times of a toy channel model. Chinese Physics B 2017, 26: 128703 (pdf)

142. 牛帅, 帅建伟, 祁宏. Bcl-2蛋白抑制钙信号的建模与全局动力学分析. 物理学报 2017, 66: 238701
Selected as one of 3 recommended papers of Acta Physica Sinica Vol.66(23) 2017(pdf)
http://wulixb.iphy.ac.cn/CN/volumn/volumn_1917.shtml

141. Cong Lv, Fengyin Li, Xiang Li, Yuhua Tian, Yue Zhang, Xiaole Sheng, Yongli Song, Qingyong Meng, Shukai Yuan, Liming Luan, Thomas Andl, Xu Feng, Baowei Jiao, Mingang Xu, Maksim Plikus, Xing Dai, Christopher Lengner, Wei Cui, Fazheng Ren, Jianwei Shuai, Sarah Millar, and Zhengquan Yu. MiR-31 promotes mammary stem cell expansion and breast tumorigenesis by suppressing Wnt signaling antagonists. Nature Communications 2017, 8: 1036 (pdf)

140. Yongfei Cai, Mingyang Su, Ahmad Ashfaq, Xiaojie Hu, Jiayan Sang, Lingyuan Kong, Xingqiang Chen, Chen Wang, Jianwei Shuai and Aidong Han*. Conformational dynamics of the essential sensor histidine kinase WalK. Acta Crystallographica Section D 2017, 73: 793-803 (pdf)

139. Yuhua Tian, Xianghui Ma, Cong Lv, Xiaole Sheng, Xiang Li, Ran Zhao, Yongli Song, Thomas Andl, Maksim V Plikus, Jinyue Sun, Fazheng Ren, Jianwei Shuai, Christopher J Lengner, Wei Cui, Zhengquan Yu. Stress responsive miR-31 is a major modulator of mouse intestinal stem cells during regeneration and tumorigenesis. eLife. 2017, 6: e29538. DOI: 10.7554/eLife.29538(pdf)

138. Fang Wei, Xiang Li, Meichun Cai, Yanping Liu, Peter Jung, Jianwei Shuai1. Regulation of 1, 4, 5-triphosphate receptor channel gating dynamics by mutant presenilin in Alzheimer's disease cells. Frontier of Physics 12(3), 128702 (2017) (pdf)

137. Xianghui Ma, Yuhua Tian, Yongli Song, Jianyun Shi, Jiuzhi Xu, Kai Xiong, Jia Li, Wenjie Xu, Yiqiang Zhao, Jianwei Shuai, Lei Chen, Maksim V. Plikus, Christopher J. Lengner, Fazheng Ren, Lixiang Xue, Zhengquan Yu. Msi2 maintains quiescent state of hair follicle stem cells by directly repressing the Hh signaling pathway. Journal of Investigative Dermatology 2017, 137: 1015-1024(pdf)

2016

136. Yuan Chen, Hong Qi, Xiang Li, Meichun Cai, Xingqiang Chen, Wen Liu, and Jianwei Shuai. Suppressing effect of Ca2+ blips on puff amplitudes by inhibiting channels to prevent recovery. Phys. Rev. E 2016, 94: 022411(pdf)

135. Xiuhong Cai, Xiang Li, Hong Qi, Fang Wei, Jianyong Chen, and Jianwei Shuai, Comparison of gating dynamics of different IP3R channels with immune algorithm searching for channel parameter distributions. Physical Biology 2016, 13: 056005 1-12(pdf)

134. Qi Zhao, Hongsheng Liu, Chenggui Yao, Jianwei Shuai, and Xiaoqiang Sun. Effect of dynamic interaction between microRNA and transcription factor on gene expression. BioMed Research International 2016, 2016: 2676282 1-11 (pdf)

133. Xiang Li, Feng Liu, Jianwei Shuai. 癌细胞信号网络动力学研究. 物理学报 2016, 65: 178704 1-14 (pdf)

132. Yuan Chen, Hong Qi, Xiang Li, and Jiangwei Shuai. 钙离子通道和钙信号震荡模型研究. 生物物理学 2016, 4: 1-26(pdf)

131. Xiang Li, Yuan Chen, Hong Qi, Liyu Liu, Jianwei Shuai. Synonymous mutations in oncogenesis and apoptosis versus survival unveiled by network modeling. Oncotarget 2016, 7: 34599-34616 (pdf)

130. Anqi Ling, Yandong Huang, Jianwei Shuai, and Yueheng Lan. Channel based generating function approach to the stochastic Hodgkin-Huxley neuronal system. Scientific Reports 2016, 6: 22662 1-12(pdf)

129. Hong Qi, Jianwei Shuai. Alzheimer's disease via enhanced calcium signaling caused by the decrease of endoplasmic reticulum–mitochondrial distance. Medical Hypotheses 89 (2016) 28–31(pdf)

2015

128.Yandong Huang, StenRuediger, and Jianwei Shuai. Accurate Langevin approaches to simulate Markovian channel dynamics. Physical Biology 12 (2015) 061001 1-22
Slected as one of 10 papers of Physical Biology Highlight of 2015(pdf)
http://iopscience.iop.org/journal/1478-3975/page/Highlights%20of%202015

127. Ashfaq Ahmad, Yongfei Cai, Xingqiang Chen, Jianwei Shuai, Aidong Han. Conformational Dynamics of Response Regulator RegX3 from Mycobacterium tuberculosis. PLOS One, 2015, 0133389 1-18(pdf)

126. Xiaopeng Hu, Zhenzhou Tang, Yang Li, Wensheng Liu, Shuang Zhang, Bingyan Wang, YingpuTian, Yinan Zhao, Hao Ran, Wenjie Liu, Gen-Sheng Feng, Jianwei Shuai, Haibin Wang* &Zhongxian Lu. Deletion of the tyrosine phosphatase Shp2 in Sertoli cells causes infertility in mice. Scientific Reports 5 (2015) 12982 1-15 (pdf)

125. Chenggui Yao, Zhiwei He, JinmingLuo, and Jianwei Shuai. Resonance induced by a spatially periodic force in the reaction-diffusion system. Physical Review E 2015, 91, 052901 1-6(pdf)

124. Yandong Huang, Xiang Li, and Jianwei Shuai. Langevin approach with rescaled noise for stochastic channel dynamics in Hodgkin-Huxley neurons. Chinese Physics B 24 (2015) 120501 (pdf)

123. Xing-Xing Wu and Jianwei Shuai. Effects of extracellular potassium diffusion on electrically coupled neuron networks. Physical Review E 91 (2015) 022712 1-10 (pdf)

122. Hong Qi, Linxi Li and Jianwei Shuai. Optimal microdomain corsstalk between endoplasmic reticulum and mitochondria for Ca2+ oscillations. Scientific Reports 5 (2015) 7984 1-11 (pdf)

121. Xing-Xing Wu, Chenggui Yao and Jianwei Shuai. Enhanced multiple vibrational resonances by Na+ and K+ dynamics in a neuron model. Scientific Reports 5 (2015) 7684 1-10 (pdf)

2014

120. Hong Qi, Yandong Huang, Sten Ruediger, and Jianwei Shuai. Frequency and Relative Prevalence of Calcium Blips and Puffs in a Model of Small IP3R Clusters. Biophysical Journal 106 (2014) 2353-2363 (pdf)

119. 莫有斌，林海，帅建伟. HIV感染－免疫动力学的元胞自动机模拟研究. 生物物理学 2 (2014) 1-13 (pdf)

118. Xiang Li, Jiqian Zhang, and Jianwei Shuai. Isoprenaline, a potential contributor in sick sinue syndrome: insights from a mathematical model of the rabbit sinoatrial node. The Scientific World Journal 2014 (2014) 540496 1-11(pdf)

117. Youbin Mo, Bin Ren, Weicao Yang, and Jianwei Shuai. The 3-dimensional cellular automata for HIV infection. Physica A 399 (2014) 31-39 (pdf)

2013

116. 蔡秀红，魏芳，陈剑勇，董斯瑜，帅建伟. 应用免疫算法研究肌醇1,4,5-磷酸三酯受体通道模型参数分布特性. 生物物理学报 29 (2013) 937-948 (pdf)

115. Chenggui Yao, Ming Yi, and Jianwei Shuai. Time delay induced different synchronization patterns in repulsively coupled chaotic oscillators. Chaos, 23 (2013) 033140 1-7 (pdf)

114. Yandong Huang, Sten Ruediger, and Jianwei Shuai. Langevin approach for stochastic Hodgkin-Huxley dynamics with discretization of channel open fraction. Physics Letters A, 377 (2013) 3223-3227 (pdf)

113. Yandong Huang and Jianwei Shuai. Induced dipoles incorportated into all-atom Zn protein simulation with multiscale modeling. The Journal of Physical Chemistry B 117 (2013) 6138-6148 (pdf)

112. 祁宏，帅建伟. IP3R钙离子通道集团中的Blip动力学 中国科技论文 8 (2013) 534-537 (pdf)

111. Yandong Huang, Sten Ruediger, and Jianwei Shuai. Channel-based Langevin approach for the stochastic Hodgkin-Huxley neuron. Physical Review E 87 (2013) 012716 1-9 (pdf)

2012

110. Tadashi Nakano, Michael J Moore, Fang Wei, Athanasios V Vasilakos and Jianwei Shuai. Molecular Communication and Networking: Opportunities and Challenges. IEEE Transactions on Nanobioscience 11 (2012) 135-148
Listed as the No.1 of the Popular Articles in IEEE Transactions on Nanobioscience (Dec 2013).(pdf)
(A copy of the website on Dec 6, 2013)

109. Xing-Xing Wu and JW Shuai. Multistability in a neuron model with extracellular potassium dynamics. Physical Review E 85 (2012) 061911 1-9 (pdf)

108. S Ruediger, P Jung and JW Shuai. Termination of Ca2+ release for clustered IP3R channels. PLoS Computational Biology 8 (2012) e1002485 1-13 (pdf)
Related comments from Faculty of 1000: http://f1000.com/717347975

107. 帅建伟、吴星星. 离子通道小尺寸团簇的随机动力学和熵效应. 神经信息学与计算神经科学的前沿问题－第367次香山会议文集 (pdf)

2011

106. Yandong Huang, Sten Ruediger, and JW Shuai. Modified Langevin approach for a stochastic calcium puff model. European Physical Journal B 83 (2011) 401-407 (pdf)

105. Rong Sheng and JW Shuai. Neuronal modeling with intracellular calcium signaling. Acta Physiologica Sinica 63 (2011) 442-452 (pdf)

104. Ian Smith, JW Shuai and Ian Parker. Active generation and propagation of calcium signals within tunneling membrane nanotubes. Biophysical Journal 100 (2011) L37-L39 (pdf)

103. 吴晨旭、帅建伟、Holger Merlitz. 软物质体系动力学特性及生物体系物质与信号的传输. 厦门大学学报--自然科学版 (厦大90周年校庆专刊), 50 (2011) 239 (pdf)

102. Fang Wei and JW Shuai. Intercellular calcium waves in glial cells with bistable dynamics. Physical Biology, 8 (2011) 026009 (pdf)

101. Hai Lin, Dong-Ping Yang, J.W. Shuai. Cooperation among mobile individuals with payoff expectations in the spatial prisoner's dilemma game. Chaos, Solitons & Fractals, 44 (2011) 153-159 (pdf)

100. Dongping Yang, Hai Lin, and JW Shuai. Coevolution of cooperation and network structure under natural selection. Europhysics Letters, 93 (2011) 48001 (pdf)

99. Fang Wei, Dongping Yang, Ronny Straube and Jianwei Shuai. Brownian Diffusion of Ion Channels in Different Membrane Patch Geometries. Physical Review E, 83 (2011) 021919 1-9 (pdf)

98. Rong Sheng, Sten Rüdiger, and Jianwei Shuai. Coherent calcium puff signals driven by intracellular noises. Physica A, 390 (2011) 1117-1123 (pdf)

2010

97. S Rüdiger, J W Shuai and IM Sokolov. Law of mass action, detailed balance, and the modeling of calcium puffs. Physical Review Letters, 105 (2010) 048103 1-4 (pdf)
Related comments from Faculty of 1000: http://f1000.com/5659956

96. T Nakano, JW Shuai, T Koujin, T Suda, Y Hiraoka, and T Haraguchi. Biological excitable media based on non-excitable cells and calcium signaling. Nano Communication Networks, 1 (2010) 43-49 (pdf)

95. S Rüdiger, C. Nagaiah, G. Warnecke and J W Shuai. Calcium domains around single and clustered IP3 receptors and their modulation by buffers. Biophysical Journal, 99 (2010) 3-12 (pdf)

94. J. W. Shuai, R. Sheng, and P. Jung. Entropically modified spiking ability and periodicity in clustered channels. Physical Review E, 81 (2010) 051913 1-7(pdf)

93. Hai Lin and J. W. Shuai. A stochastic spatial model of HIV dynamics with an asymmetric battle between virus and immune system. New Journal of Physics, 12 (2010) 043051 1-18 (pdf)
Related comments:
(1) From Physics World:
http://physicsworld.com/cws/article/news/42515
(2) From Institute of Physics:
http://www.iop.org/news/apr10/page_43372.html
(3) The above two comments are also posted in the following websites:
http://www.sciencedaily.com/releases/2010/04/100429082347.htm
http://bulletin.sciencebusiness.net/ebulletins/showissue.php3?page=/548/art/17802
http://www.hivworkshop.com/2010%20news/may/may10-1-1.htm
http://www.daneshju.ir/forum/f477/t94112.html
(4) The paper is listed as ‘Best of 2010’ in the New Journal of Physics:
http://iopscience.iop.org/1367-2630/page/Best%20of%202010

92. J. W. Shuai, Y. D. Huang, and S Rüdiger. Puff-wave transition in an inhomogeneous model for calcium signals. Physical Review E, 81 (2010) 041904 1-8 (pdf)

2009

91. Ian F Smith, Steven M Wiltgen, Jianwei Shuai and Ian Parker. Ca2+ puffs originate from pre-established stable clusters of inositol trisphosphate receptors. Science Signaling, 2 (2009) p. ra77
The Online Full Text: http://stke.sciencemag.org/cgi/content/abstract/sigtrans;2/98/ra77.
Editor’s Summary: No Assembly Required: http://stke.sciencemag.org/cgi/content/summary/sigtrans;2/98/ra77

90. J. W. Shuai, Dongping Yang, J. E. Pearson, and S. Rüdiger. An investigation of models of the IP3R channel in Xenopus Oocyte. Chaos, 19 (2009) 037105 1-11 (pdf)

89. Dong-Ping Yang, Hai Lin, Chen-Xu Wu, and J. W. Shuai. Effect of mortality selection on the emergence of cooperation with network dynamics. New Journal of Physics, 11 (2009) 073048 1-13 (pdf)

88. Dongping Yang, Hai Lin, Chen-Xu Wu and J W Shuai. Modelling moran process with network dynamics for the evolution of cooperation. Chinese Physics Letters, 26 (2009) 68902 1-4 (pdf)

87. X L Liao, P Jung, and J W Shuai. Global noise and oscillations in clustered excitable media. Physical Review E, 79 (2009) 41923 1-6 (pdf)

86. Dongping Yang, J W Shuai, Hai Lin and Chenxu Wu. Individual’s strategy characterized by local topology conditions in prisoner’s dilemma on scale-free networks. Physica A, 388 (2009) 2750-2756 (pdf)

2008

85. J W Shuai, J E Pearson, and I Parker. Modeling Ca2+ feedback on a single inositol 1,4,5trisphosphate receptor and its modulation by Ca2+ buffers. Biophysical Journal, 95 (2008) 3738-3752(pdf)

2007

84. S. Rüdiger, J W Shuai, W Huisinga, C Nagaiah, G Warnecke, I Parker, and M Falcke. Hybrid Stochastic and Deterministic Simulations of Calcium Blips. Biophysical Journal, 93 (2007) 1847-1857 (pdf)

83. J W Shuai, J E Pearson, J K Foskett, D D Mak, and I Parker. A Kinetic Model of Single and Clustered IP3 Receptors in the Absence of Ca2+ Feedback. Biophysical Journal, 93 (2007) 1151-1162(pdf)

82. L. Ionescu, C. White, K-H. Cheung, J W Shuai, I. Parker, J. E. Pearson, J. K. Foskett, and D-O.O. Mak. Mode switching is the major mechanism of ligand regulation of InsP3 receptor calcium release channels. Journal of General Physiology, 130 (2007) 631-645.(pdf)

2006

81. J W Shuai, H J Rose and I Parker. The number and spatial distribution of IP3R receptors underlying calcium puffs in Xenopus oocytes. Biophysical Journal, 91: 4033-4044 (2006) (pdf)

80. H J Rose, S Dargan, J W Shuai and I Parker. Trigger events preceding calcium puffs in Xenopus oocytes. Biophysical Journal, 91: 4024-4032 (2006) (pdf)
Related comments from Faculty of 1000:
http://f1000.com/1047479

79. J W Shuai and P Jung. The dynamics of small excitable ion channel clusters. Chaos, 16: 26104 1-10 (2006).(pdf)

2005

78. J W Shuai and P Jung. Entropically enhanced excitability in small systems. Physical Review Letters, 95: 114501 1-4 (2005) (pdf)

77. J W Shuai and I Parker. Optical single-channel recording by imaging Ca2+ flux through individual ion channels: theoretical considerations and limits to resolution. Cell Calcium, 37: 283-299 (2005) (pdf)

2004

76. J Lian, J W Shuai, and D M Durand. Control of Phase Synchronization of Neuronal Activity in the Rat Hippocampus. Journal of Neural Engineering, 1: 46-54 (2004)(pdf)
Related ‘News and Analysis’ from the magazine Physics World – April 2004

75. J Y Chen, K W Wong, and J W Shuai. Phase synchronization between two different oscillators with unidirectional signal coupling. International Journal of Bifurcation and Chaos, 14: 1877-1884 (2004) (pdf)

74. J W Shuai and P Jung. Langevin Modeling of Intracellular Calcium Dynamics. In "Function and Regulation of Cellular Systems: Experiments and Models". Edited by A. Deutsch, J. Howard, M. Falcke and W. Zimmermann. Birkhaeuser Verlag Basel (2004).(pdf)

73. J W Shuai, S Nadkarni, P Jung, A H Cornell-Bell, and V Trinkaus-Randall. Mathematical Modeling of Intracellular and Intercellular Calcium Signaling. Advances in Molecular and Cell Biology 31 (2004) 689-706 (pdf)

2003

72. J W Shuai and P Jung. Optimal ion channel clustering for intracellular calcium signaling. Proceedings of the National Academy of Sciences of USA, 100: 506-510 (2003) (pdf)

71. J W Shuai and D M Durand. Strange nonchaotic attractor in high-dimensional neural system. International Journal of Bifurcation and Chaos, 13: 251-260 (2003) (pdf)

70. J W Shuai, M Bikson, P J Hahn, J Lian and D M Durand. Ionic mechanisms underlying spontaneous CA1 neuronal firing in calcium free solution. Biophysical Journal, 84: 2099-2111 (2003) (pdf)

69. J W Shuai and P Jung. Selection of Intracellular Calcium Patterns in a Model with Clustered Ca2+ Release Channels. Physical Review E, 67: 031905 (2003)(pdf)

68. J W Shuai and P Jung. Sub-threshold Ca2+ waves. New Journal of Physics, 5: 132.1-132.20 (2003) (pdf)

67. J W Shuai and P Jung. Statistical Properties of Ca2+ Puffs. Nova Acta Leopoldina NF 88, Nr. 332, 8211 (2003)(pdf)

66. J W Shuai and P Jung. Langevin Modeling of Intracellular Calcium Signaling. In “Lecture Notes in Physics: Understanding Calcium Dynamics: Experiment and Theory” Vol. 623, 231-252. Edited by M Falcke and D Malchow, Springer-Verlag Heidelberg (2003)(pdf)

65. P Jung, S Zeng and J W Shuai. Signals from Clustered Ion Channels. Advances in Solid State Physics, 43: 605-616 (2003). (pdf)

64. J Y Chen, K W Wong, L M Cheng and J W Shuai. A Secure Communication Scheme Based on Phase Synchronization of Chaotic Systems. Chaos, 13: 508-514 (2003) (pdf)

2002

63. J W Shuai and P Jung. Optimal Intracellular Calcium Signaling. Physical Review Letters, 88: 68102 1-4 (2002) (pdf).

62. J W Shuai and P Jung. Stochastic Properties of Ca2+ Release of Inositol 1,4,5-Trisphosphate Receptor Clusters. Biophysical Journal, 83 (2002) 87-97 (pdf)

61. J Y Chen, K W Wong, and J W Shuai. The n:m phase synchronization with mutual coupling phase signals. Chaos, 12 (2002) 100-106 (pdf)

60. J Y Chen, K W Wong, H Y Zheng and J W Shuai. The coupling of dynamics in coupled map lattices. Discrete Dynamics in Nature and Society, 7 (2002) 157-160.(pdf)

59. J W Shuai and P Jung. Coherence Resonance: On the Use and Abuse of the Fano Factor. Fluctuation and Noise Letters, 2 (2002) L137-L144. (pdf)

58. J Y Chen, K W Wong, and J W Shuai. Phase synchronization in coupled chaotic oscillators with time delay. Physical Review E, 66 (2002) 056203-1 – 056203-7. (pdf)

2001

57. J W Shuai and K W Wong. Reply to comment on Simple approach to the creation of a strange nonchaotic attractor in any chaotic system. Physical Review E, 64 (2001) 058202-1~2 (pdf)

56. J W Shuai, J Lian, P J Hahn, and D M Durand. Positive Lyapunov exponents calculated from time series of strange nonchaotic-attractors. Physical Review E, 64 (2001) 026220-1 ~ 026220-5. (pdf). Erratum: Positive Lyapunov exponents from time series of strange nonchaotic system. Physical Review E, 66 (2002) 039903. (pdf)

55. J Y Chen, K W Wong, and J W Shuai. Properties of phase locking with weak phase-coherent attractors. Physics Letters A, 285 (2001) 312-318 (pdf)

54. J Lian, J W Shuai, and D M Durand. Nonlinear dynamic properties of low calcium induced epileptiform activity. Brain Research, 890 (2001) 246-254 (pdf)

53. P Jung and J W Shuai. Optimal sizes of ion channel clusters. Europhysics Letters, 56 (2001) 29-35 (pdf)

52. J Lian, M Bikson, J W Shuai, and D M Durand. Propagation of non-synaptic epileptiform activity across a lesion in rat hippocampal slices. Journal of Physiology (London) 537 (2001) 191-199 (pdf)

51. J Y Chen, K W Wong and J W Shuai. Phase signal coupling induced n:m phase synchronization in drive-response oscillators. Physical Review E, 63 (2001) 036214 (pdf)

50. J Y Chen, K W Wong, H Y Zheng, and J W Shuai. Intermittent phase synchronization of coupled spatiotemporal chaotic systems. Physical Review E, 64 (2001) 016212-1 ~ 7 (pdf)

49. J Y Chen, K W Wong, H Y Zheng, and J W Shuai. Synchronizing spatiotemporal chaos by introducing a finite flat region in the local map. Discrete Dynamics in Nature and Society, 6 (2001) 201-206(pdf)

2000

48. J W Shuai, Y Kashimori,, T Kambara, and M Naito. Truncated chaotic trajectories in periodically driven systems with largely converging dynamics. Physics Letters A, 267 (2000) 335-341. (pdf)

47. J W Shuai and D M Durand. Strange nonchaotic attractor in low-frequency quasiperiodically driven systems. International Journal of Bifurcation and Chaos, 10 (2000) 2269-2276. (pdf)

46. J Y Chen, K W Wong, Z X Chen, S C Xu and J W Shuai. Phase synchronization in discrete chaotic systems. Physical Review E, 61 (2000) 2559-2562 (pdf)

1999

45. J W Shuai and K W Wong. Simple approach to the creation of a strange nonchaotic attractor in any chaotic system. Physical Review E, 59 (1999) 5338-5343 (pdf)

44. J W Shuai, Y Kashimori, T Kambara, and G v d Emde. Eectroreceptor model of weakly electric fish Gnathonemus Petersii: II. Cellular origin of inverse waveform tuning. Biophysical Journal, 76 (1999) 3012-3025 (pdf)

43. J W Shuai and D M Durand. Phase synchronization in two coupled chaotic neurons. Physics Letters A, 264 (1999) 289-297 (pdf)

42. J Y Chen, K W Wong and J W Shuai. Finding the Chaotic Synchronizing State with Gradient Descent Algorithm. Physics Letters A, 263 (1999) 315-322 (pdf)

1998

41. J W Shuai and K W Wong. Noise and synchronization in chaotic neural networks. Physical Review E, 57 (1998) 7002-7007 (pdf)

40. J Y Chen, Z X Chen, J W Shuai, Y Y Lu, D H Guo, and Z X Chen. A chaotic lattice and the circuit of its unit. Canadian Journal of Physics, 76 (1998) 801-808

39. J W Shuai and K W Wong. Nonchaotic attractors with highly-fluctuating finite-time Lyapunov exponents. Physical Review E, 57 (1998) 5332-5336 (pdf)

38. J W Shuai, Y Kashimori, and T Kambara. Electroreceptor model of the weakly electric fish Gnathonemus Petersii: I. The model and the origin of differences between A- and B-receptors. Biophysical Journal, 75 (1998) 1712-1726 (pdf)

37. 陈建勇, 陈振湘, 郭东辉, 帅建伟. 一种混沌神经网络的简单电路兑现. 量子电子学报, 15 (1998) 356-361 (pdf)

1997

36. J W Shuai, Z X Chen, R T Liu, and B X Wu. Maximum hyperchaos in chaotic nonmonotonic neuronal networks. Physical Review E, 56 (1997) 890-893 (pdf)

35. J W Shuai, K W Wong, and L M Cheng. Synchronization of spatiotemporal chaos with positive conditional Lyapunov exponents. Physical Review E, 56 (1997) 2272-2275 (pdf)

34. J W Shuai, Z X Chen, R T Liu, and B X Wu. A simple way to determine the connecting of a multilinear neural network. Physics Letters A, 227 (1997) 94-96 (pdf)

33. J W Shuai, Z X Chen, R T Liu, and B X Wu. Three-dimensional rotation neural network. Physica A, 238 (1997) 23-38 (pdf)

32. J C Zheng, J Y Chen, J W Shuai, S H Cai, and R Z Wang. Storage capacity of the Hopfield neural network. Physica A, 246 (1997) 313-319 (pdf)

31. 陈建勇, 陈振湘, 郑金成, 帅建伟. 非单调混沌神经元的电路实现. 半导体光电, 18 (1997) 302-306 (pdf)

1996

30. J W Shuai, Z X Chen, R T Liu, and B X Wu. A chaotic neural network model. Chinese Physics Letters, 13 (1996) 185-188

29. J W Shuai, Z X Chen, R T Liu, and B X Wu. Self evolution neural network. Physics Letters A, 221 (1996) 311-316 (pdf)

28. Z X Chen, J W Shuai, R T Liu and B X Wu. Hamilton number neural network model. Semiconductor Photonics and Technology, 2 (1996) 1-5

27. Z X Chen, J W Shuai, J C Zheng, R T Liu, and B X Wu. The storage capacity of the complex phase neural network. Physica A, 225 (1996) 157-163 (pdf)

26. Z G Xu, Z X Chen, A N Ji, and J W Shuai. Electro-luminescence device to implement the clipped Hopfield neural network. Semiconductor Photonics and Technology, 2 (1996) 124-129

25. 帅建伟，陈振湘，刘瑞堂，吴伯僖. 四元数神经网络模型的计算机模拟研究. 红外与毫米波学报, 15 (1996) 50-54 (pdf)

24. 陈振湘, 帅建伟, 郑金成, 刘瑞堂. 三维转动神经网络的研究: (1) 能量函数. 厦门大学学报--自然科学版, 35 (1996) 343-347 (pdf)

23. 陈振湘, 帅建伟, 郑金成, 刘瑞堂. 三维转动神经网络的研究: (2) 存储容量. 厦门大学学报--自然科学版, 35 (1996) 511-514 (pdf)

22. 郑金成, 帅建伟, 陈振湘, 刘瑞堂, 吴伯僖. 应用信噪比理论分析复相角神经网络的存储容量. 量子电子学 13 (1996) 372-377 (pdf)

21. 郑金成, 帅建伟, 王仁智，陈振湘. Hopfield神经网络的存储容量. 自然杂志 18 (1996) 245-246 (pdf)

20. 郑金成, 帅建伟, 陈振湘, 刘瑞堂, 吴伯僖. 应用信噪比理论分析三维转动角神经网络模型的存储容量. 自然杂志 18 (1996) 53 (pdf)

19. 郑金成, 帅建伟，王仁智，陈振湘. Hopfield神经网络的存储容量. 半导体光电, 17 (1996) 338-341 (pdf)

1995

18. Z X Chen, J W Shuai, R T Liu, and B X Wu. The stability of the 2n-element number neural network models. Physica A, 218 (1995) 291-297 (pdf)

17. J W Shuai, Z X Chen, R T Liu, and B X Wu. Storage capacity of complex Hopfield model. Semiconductor Photonics and Technology, 1 (1995) 35-42

16. J W Shuai, Z X Chen, R T Liu, and B X Wu. The Hamilton neural network model. Physica A, 216 (1995) 20-31 (pdf)

15. J W Shuai, Z X Chen, R T Liu, and B X Wu. The 2n-element number neural network model: recognition of the multistate patterns. Journal of Modern Optics, 42 (1995) 1179-1188

14. J W Shuai, Z X Chen, R T Liu, and B X Wu. Hamilton neural network model: recognition of the color patterns. Applied Optics, 34 (1995) 6764-6768 (pdf)

13. 帅建伟，陈振湘，刘瑞堂，吴伯僖. 八元数神经网络模型：256色图像的识别. 光学学报. 15 (1995) 877-882 (pdf)

12. 帅建伟，陈振湘，刘瑞堂，吴伯僖. 四元数神经网络模型：彩色图像的识别. 计算机学报. 18 (1995) 372-379 (pdf)

11. 帅建伟，陈振湘，刘瑞堂，吴伯僖. 离散复数神经网络模型. 科技通报 11 (1995) 203-208 (pdf)

10. 帅建伟，陈振湘，刘瑞堂，吴伯僖. 2n 元数神经网络模型：存储容量分析. 厦门大学学报--自然科学版, 34 (1995) 353-358 (pdf)

9. 帅建伟，陈振湘，刘瑞堂，吴伯僖. 2n 元数神经网络模型: 多值图像的识别应用. 厦门大学学报--自然科学版, 34 (1995) 727-732 (pdf)

8. 帅建伟，陈振湘，刘瑞堂. 权重神经网络的光电兑现研究. 半导体光电 16 (1995) 40-42 (pdf)

7. 郑金成, 帅建伟, 陈振湘, 刘瑞堂. 复相角神经网络模型的存储容量分析. 自然杂志 17 (1995) 301-302 (pdf)

6. 陈振湘，帅建伟，刘瑞堂，吴伯僖. 运用四元数神经网络模型识别16色彩色字符. 模式识别与人工智能 8 (1995) 101-105 (pdf)

5. 陈振湘，帅建伟，刘瑞堂，吴伯僖. 异步四元数神经网络模型的能量函数研究. 量子电子学报, 12 (1995) 262-267 (pdf)

4. 陈振湘，帅建伟，纪安妮. 粉末电致发光器件的新应用: 一种光神经器件. 光电子技术 1 (1995) 68-71 (pdf)

3. 陈振湘，帅建伟，刘瑞堂. 异步复相角神经网络模型的能量函数研究. 厦门大学学报--自然科学版, 34 (1995) 898-903 (pdf)

1994

2. 帅建伟，陈振湘，刘瑞堂，吴伯僖. 对二次函数切割的分形研究. 厦门大学学报--自然科学版, 33 (1994) 880-882 (pdf)

1993

1. 帅建伟，陈坚令，洪秀霞，吴伯僖. 电致发光屏界面的阻抗谱和分形研究. 厦门大学学报--自然科学版, 32 (1993) 424-429 (pdf)

帅建伟

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